Scaffold Ga0187765_10349164

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0187765_10349164

Scaffold Ga0187765_10349164

Overview

Basic Information
Taxon OID	3300018060 Open in IMG/M
Scaffold ID	Ga0187765_10349164 Open in IMG/M
Source Dataset Name	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_10_MG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	900
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location
Location Name	Colombia: Department of Meta
Coordinates	Lat. (^o)	3.8381	Long. (^o)	-73.3194	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F017532	Metagenome / Metatranscriptome	240	Y
F103712	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0187765_103491642	F017532	GGAGG	VTRPPDDHEPGRHPPDYVIVVAASDWITDRYPAAAASLTQALQPGQDRHRDPEPDLEAEP
Ga0187765_103491643	F103712	GGAGG	MTADWIDLDLITDVLDVLDRHGYARSDTEHATRAILLISDLAHIYEGSQEHPSGPAVNQPAPQAELAPPLPATQNAVPVPIGEVKTLLCALDIAAECNRDRAELCADCTGQSCPACELRLRDAQTYDHLYAQLDQEADASPTASHPEPATQPQLTADREAGQ

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