Scaffold Ga0187765_10105738

Overview

Basic Information

• Taxon OID: 3300018060
• Scaffold ID: Ga0187765_10105738
• Source Dataset Name: Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_10_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1539
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → unclassified Myxococcaceae → Myxococcaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location

• Location Name: Colombia: Department of Meta
• Coordinates
  • Lat. (^o): 3.8381
  • Long. (^o): -73.3194
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029284	Metagenome / Metatranscriptome	189	Y
F048662	Metagenome / Metatranscriptome	148	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0187765_101057382	F029284	GGGGG	VKQDVVLVASEDVRTRQELAERLDWDDVPFELASSPHEAVERISELPAGIRLFVVLDFERRARAQVMDALREREDLDVQLLLMHDPQEDGLTDDKVVEHVRRPAVADYLYRLVERHAHRAEA
Ga0187765_101057383	F048662	N/A	MSGSQPPGPEDAHAPLRAALLREPWIVIEVPEPIRSEVLAVRSIVSRVDARTPVGIGSVGPLPPQNLDQVRRILDQVADETAVIIGRFAAIRRFPQTRYVYLAPDDEMATSLLILQDRLVEGGLRLLPDVYQSTPHAVLGRVPPEVELEVAARARHLVPSPVFRMTTMALWMLGEGEASCLHRVAFTGVL