Scaffold Ga0187765_10024529

Overview

Basic Information

• Taxon OID: 3300018060
• Scaffold ID: Ga0187765_10024529
• Source Dataset Name: Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_10_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2910
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location

• Location Name: Colombia: Department of Meta
• Coordinates
  • Lat. (^o): 3.8381
  • Long. (^o): -73.3194
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F049170	Metagenome	147	N
F056589	Metagenome / Metatranscriptome	137	Y
F074923	Metagenome	119	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0187765_100245292	F056589	N/A	MSLGNSAARTRSKLAIRVKKILTRIYLAFDESQRRRAAEVVHRYRHLIPDYDESSKKENKID
Ga0187765_100245293	F049170	GGAGG	VQTAAIIDIAFVVAVFLFVSLVRPDLHIEGGRSLLEFRDPLSLMPRTENLGADENFEASRQQCAPLQMDRGDTD
Ga0187765_100245295	F074923	AGCAG	MTRAQASRSLLNREFPHRVLIHVENVRGRILNQVHTFHANRGAQVRCHSLPQDDKWLAVYCFATRETAEAFHLLFGGELTESSMPH