NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187858_10217316

Scaffold Ga0187858_10217316


Overview

Basic Information
Taxon OID3300018057 Open in IMG/M
Scaffold IDGa0187858_10217316 Open in IMG/M
Source Dataset NamePeatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_150
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1240
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014867Metagenome259Y
F099394Metagenome / Metatranscriptome103N

Sequences

Protein IDFamilyRBSSequence
Ga0187858_102173162F014867GAGGMRLLFPSSYDRADLLMSAGCCTFVSAALIVVIPRLGILLLELLLGLFFIGCAVVARKRLRRQARDKDGSDKAKDARTRRLDRYDIFLILAVILVRTSAAGSLRRAGLSEGTVGILPLFLFAAGILLKPRAVEFMEARRKNKQDGRGSINVASLDSAGAAPVPASEARAQAVVRAAAQNGDLE
Ga0187858_102173164F099394N/ALSDMSFSFLTASEVALPLAEQQNPRKSGCFKETKVSII
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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