Scaffold Ga0184623_10021594

Overview

Basic Information

• Taxon OID: 3300018056
• Scaffold ID: Ga0184623_10021594
• Source Dataset Name: Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_b1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2860
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.9195
  • Long. (^o): -106.9496

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013593	Metagenome / Metatranscriptome	270	Y
F030603	Metagenome	185	Y
F041659	Metagenome	159	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0184623_100215942	F030603	AGGA	MRKRRSSTNSHFDPEMAMSLALVRYHFSTPEIRLLMRHVLGYALSGRTIKRLARSSGNTLKRGRPRTTPRVYKGDMNDLIQVTSNGIEAFGGNTLQFFHNVQVQFGLTPRQYLMWVAKFVRRGKCMLRRCLLCNRLFPSVNSGDRHCFQCRTNRRQLLKEKGESVFAAFEETIHG
Ga0184623_100215943	F041659	GGAGG	MSSEKHFLDEQGMADLARKSIEILRQEGASPTELRRLETLLKEGSVGEAFIMSSLLRTILAEISPEASQKKLLLVYRGLEEICQSLVQLSRNLFDIEAWQHFRDSGHESFESYCVEMLGIPASKIHALRLLKDQPLPRPKKAGPAELFAWFFNAIENLVTSETECGR
Ga0184623_100215944	F013593	AGGGGG	MADISYSLETLTGKHGGLLEVIEAIVSDGRLILILTDEDVLQRRDAPLKGIFYRVVLPLAQANISVKGEAFGLVRDSLKFTEDGRGLENLVRELGR