Scaffold Ga0184623_10000064

Overview

Basic Information

• Taxon OID: 3300018056
• Scaffold ID: Ga0184623_10000064
• Source Dataset Name: Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_b1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 39596
• Total Scaffold Genes: 40
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (27.50%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.9195
  • Long. (^o): -106.9496

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012397	Metagenome	281	Y
F012471	Metagenome / Metatranscriptome	280	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0184623_1000006422	F012471	N/A	MVIFNVSETWSNSHNRTFRGFDPDDDKVEVRANGNIPCVIDGNGNCTITGDRRRIYCHYNNYNAILTVTLIPHFAGTNDNCSLKMRSRHNEPGMTCKGGSPLDGYRFGGYGFAVNKNGWNAKREPTHNCHDQHKSGSVPKVLENGKAVKLRQSVKDQDEMVHQTGEIDYMDGNGFYKVMEIFDNSPKPWMVDRNLYERKSYFWIRNNGSGSITVRDVSLEILL
Ga0184623_1000006437	F012397	AGGAG	LNRILIPMILVTTLSLLSGPSLAISEIKGEIKATPPLNWEPSPTNNSTTMIWFQNSTKSVFAIIKAPDNLVFPLFFVGPFMTEYLKHKGVLESADQLTFGHSNHGYRYFLNLSSPSKLLNSSSGLIPENDFLRKIPQGYDVPFKGMLILTQKQNELYAIIFLNPKEKFDSILNEIQPTLDSIQLTSYTTMLN