NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0184616_10150350

Scaffold Ga0184616_10150350


Overview

Basic Information
Taxon OID3300018055 Open in IMG/M
Scaffold IDGa0184616_10150350 Open in IMG/M
Source Dataset NameGroundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_90_coex
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)860
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.9195Long. (o)-106.9496Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001481Metagenome / Metatranscriptome687Y
F003919Metagenome / Metatranscriptome462Y

Sequences

Protein IDFamilyRBSSequence
Ga0184616_101503502F003919AGGAGMKFVSPDTHCHDYKKRRSAFLKELIASTQNVSLRAEEFRRWIDKNSPYSDNDEA
Ga0184616_101503503F001481N/AMTKRKTTPELARSLDADWPPREPMTLADLIAEARAVDWDFAQWCYVSGHDASDSDARNMFECLLAYASSEGRAGLH

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