Scaffold Ga0184621_10121985

Overview

Basic Information

• Taxon OID: 3300018054
• Scaffold ID: Ga0184621_10121985
• Source Dataset Name: Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_b1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 932
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.9195
  • Long. (^o): -106.9496

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031593	Metagenome / Metatranscriptome	182	Y
F055002	Metagenome / Metatranscriptome	139	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0184621_101219851	F055002	GGA	MAVRQTRNQSGGAKLTQNARAGFLGIAPATILAIGIVALLGLVAGGFLLHSRLDKLETELAFAKRDVESTNERLMSLQREVSQIRQDQSSAAATIARLDNRLSAMAQPTSPMNNELQITPVEAKLIREFLMKIDAFKPMVEAGHKVGDTIPEDRLLDFSALLTQGVPKLKNTNYTIDQNGSIIIVSENRFVAILDFMNVAR
Ga0184621_101219852	F031593	N/A	DPSQPSEFKLLVEERRIIESVAGNEHLEIQWRLATLKEAKAVVTQYHKYLKENSLVKSVFEPEILPPESQDGRSPNAESKRRG