Scaffold Ga0184638_1093391

Overview

Basic Information

• Taxon OID: 3300018052
• Scaffold ID: Ga0184638_1093391
• Source Dataset Name: Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1104
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.9195
  • Long. (^o): -106.9496

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013837	Metagenome / Metatranscriptome	268	Y
F043689	Metagenome / Metatranscriptome	156	Y
F050357	Metagenome / Metatranscriptome	145	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0184638_10933911	F013837	GAG	MTTLMDTDRTEAPERPRSKPAAAVDARRDTATESRSLERSFEVASRGGYARTVVGRLAYFDEEAQTYMVLTRSGALVRVPLRDITSSRGVPRTGPIVADALSRMSRLRSVTTVSPT
Ga0184638_10933912	F043689	AGGAGG	MTTLMDTVRIEAPTRSPVRPASPLDPSWDDGSDTPSSERSVQGRSRSTQWDPLAMGRGQSLSSEPA
Ga0184638_10933913	F050357	N/A	EPVEGIRLWRASRQKLVGMVYLDKGVLDLDIQDDHERALVEDVLEQTGQVTWSFSRFDEGEWQENIAEPRTERWLWFVVANILYPMGYQADLGISEDGEPTTG