Scaffold Ga0184638_1000367

Overview

Basic Information

• Taxon OID: 3300018052
• Scaffold ID: Ga0184638_1000367
• Source Dataset Name: Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12476
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.9195
  • Long. (^o): -106.9496

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003192	Metagenome / Metatranscriptome	502	Y
F007625	Metagenome / Metatranscriptome	348	Y
F009618	Metagenome / Metatranscriptome	315	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0184638_100036712	F009618	GAGG	VVHVQLKFNGRCALGATLAVVLALSLVPAAGAGAYIYWWQRNMAPDQVGRDTLTPHNHSYNELYFGPNAGWLSQVWEVTPAGYRHFDKRCVGNCFNAHPRYFSTYSYCANRDGRVHFVYDCMDEW
Ga0184638_100036713	F007625	GAG	MKKTIFFTCVIASVAIGAAVLSQLGLGGGERTVIGNGSVSALGRVARATDRLPPSVLSYPFAARNFASKDGAGARLLKTQDSLQLYAVPGKGGMLCLVEVDELAGTAGGACADRAVLRTGSIYMADRQEDGSRQVVGLVGDGHTFAEANGKRTRVENNAFVLPNAEGTGFTVGSPEATQTVDLGD
Ga0184638_10003678	F003192	AGGAG	MSTTPTDPPPQSGGYGRPGGPNVNLNLGAIMPTPGNAELVVYVLATVLVAIIALAADQVDSGAFVTAFTALTFAYLISRGIAKASRVLEQ