Scaffold Ga0181606_10033475

Overview

Basic Information

• Taxon OID: 3300018048
• Scaffold ID: Ga0181606_10033475
• Source Dataset Name: Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041412US metaG (megahit assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3667
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Maricaulales → Maricaulaceae → Maricaulis → unclassified Maricaulis → Maricaulis sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.972
  • Long. (^o): -81.028
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020913	Metagenome / Metatranscriptome	221	N
F021778	Metagenome / Metatranscriptome	217	N
F023859	Metagenome / Metatranscriptome	208	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181606_100334755	F021778	GGAGG	MAMPKFLEDYTTVDELISKMNKEYPECRLVAEMVDNGDDWVIFKSSFYENKEDTEPKATGYARQTKADHNSWFEMASTKANGRCLRVVFSESTTAEEMIGIAPSKEATPQKSIEKELDKAGIEYEDVSVSKTHVINNIKSFAMDVSSENKTNAANWYAQALGELGINETQLDINNMQTVKNKIQDIATELQVGGA
Ga0181606_100334756	F020913	AGTAGG	MLGLFGRNKPLSVVEDIQLEKEPSEFRKVQYILELEGFICSLDPEFNKNGNLRKAVNRLRTQYNALIYTEVCNCDNKQYAKLKKNGSPFMHNAYIKDWAL
Ga0181606_100334758	F023859	AGGA	MKKVIVKFIGVKKYLVRDDTDPEKIKSMFQKDLELLPPVWANNIEAVMYAKDVPEEEEE