Scaffold Ga0187859_10000351

Overview

Basic Information

• Taxon OID: 3300018047
• Scaffold ID: Ga0187859_10000351
• Source Dataset Name: Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_10
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 31383
• Total Scaffold Genes: 35
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 34 (97.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Minnesota
• Coordinates
  • Lat. (^o): 47.5028
  • Long. (^o): -93.4828

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000272	Metagenome / Metatranscriptome	1408	Y
F014320	Metagenome / Metatranscriptome	264	Y
F060251	Metagenome / Metatranscriptome	133	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0187859_1000035119	F060251	AGGA	MVKRIAPMLAVTFLLLATSGVWCQKYPSNELRQKLQFNSSNSVLVQRQEMRTGSSFPDAPSSAQRPTEAVKFRTFVNKTGSPLTPGAFRVSAGAMPGTEPGHVTRGPQPNFTDDYKVVFSQEESRGFLDKYLYPSLLKQDARYYASTSDSFMGRASYAASRILVTRDDSGKGRLNTQYLFRLLTQVASTAAYRPSWARSTSSTLNNFGSTIGSDAGMKVYQEFGPGIRQMVKGFTPKFVSRIEERINHDRSAR
Ga0187859_1000035135	F014320	N/A	PKGRSVLCLDTNADVLAYLRELLHRAGYDVQSSMRVSDAVLLMRITHFDLLLVGPDMTATAAKPPAFQSACARLPVIELGSDFSTSDAGEAGAQLLETIEARLNAKTA
Ga0187859_100003514	F000272	AGGAGG	MSQTVAERTAEHVSESARQASRATSAIADALGDGVRVMRRTAKQGGDAAEEILNDTGERLQRHLVLTIAATLVIGVTAGTLVGWMSKRS