NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187851_10067707

Scaffold Ga0187851_10067707


Overview

Basic Information
Taxon OID3300018046 Open in IMG/M
Scaffold IDGa0187851_10067707 Open in IMG/M
Source Dataset NamePeatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_10
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2277
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F057830Metagenome135N
F096473Metagenome104N

Sequences

Protein IDFamilyRBSSequence
Ga0187851_100677071F096473N/AEVLNQDSWTKLTLLEPQPLINFSSTPSVTPAASPFVVTGTSNLGSLPVYIQTSFVGRQRHTTASATNGTTISLSPYRVDTDEVFVFVGYGTTKQQLLSSAADYTVDQYGNFTPITLAAAATTVDIFFEEEFPAYQCSVDQVNWSPLLMLDPARPYPDGATSFPPIAWSMDSKGNLALPVTDEIGTPTGMYIEIGSAVPTQAYLLQAVGQASPNTVGATALLEIDFAQLSYLTVLRMTPFTTFPMILTKVEIQGITTNTRQTVWSGSTPIDQPTALHLDQIMGINPLVSKVFLTFYQPNYSLKQQTVTPPDALRLNVMSQLQAVLPFNARNVVPPPAVVYTGAQYEFGVADVSGEAWTASSGVFVSGPNRFVGIPELIRFDAVSTDGISNATYTGTYVPPNLINKIPSAQNSSGSLAHMMSGESLAMSEDTSGGPVDFYLCFQAFDNTGTVIKQNLTGYLLPTGGSGQCFSFTYPFINGWSIGSGALSQIDHVDFYIKIVHRSSSAVAQHYMLQVTGQ
Ga0187851_100677072F057830AGAAGMFNSLLLDSNDSVIADRLSRLQDSLRGLTLSTREEYQAAVYSMVNTVLNLGDNMQTLTQIRSKPAIVGDLSQNLTLLNQDSNDIAAEILRIENSAGDLYNLAAASQNALRQLIRQSIYISNQQQFLAPFIDDSVLQPGYTATLDYNAGLATLPLGTQTLLSPTFSIGIGSSGSAVNAISNLSSTTVGTSFQWSGSSLEMLLSFPSPTIVNRLQIALDTYTGLEITNLTSSPDGLVFND
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Institute for Fundamental Biomedical Research
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