Scaffold Ga0187851

Basic Information
Taxon OID	3300018046 Open in IMG/M
Scaffold ID	Ga0187851_10023709 Open in IMG/M
Source Dataset Name	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_10
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_10

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	4259
Total Scaffold Genes	10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (90.00%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (100.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

4259

Total Scaffold Genes

10 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

9 (90.00%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (100.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location Name	USA: Minnesota
Coordinates	Lat. (^o)	47.5028	Long. (^o)	-93.4828	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Minnesota

Coordinates

Lat. (^o)

47.5028

Long. (^o)

-93.4828

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005296	Metagenome	405	Y
F009261	Metagenome	320	Y
F025900	Metagenome	199	N
F050080	Metagenome	145	N
F062380	Metagenome	130	N
F100248	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0187851_100237091	F100248	GGA	MTKLSILAILSLAFIGVTRLAQFVLSLFVIVFFGFTTFELIRTFRQPAK
Ga0187851_100237092	F009261	AGGAG	MILTPSNTGNVAAGVGVGIFAWGAFLKADKIPWIQKLLTTKRKDATLKWIDENKGISLLGLETINFGIHGITNPNSVMFALGNTILNIFMLWVFLPFRMASAAKKHTMSVLKGVA
Ga0187851_100237093	F005296	AGGA	MPIWLLWLLPSYEAGFWSALIAGKLRDRGKTRELLVYGRPARTRLPILDERLRKAAGTPTKSQALVARWITTSLRWLANTRAMEYSILLGLKRVWPKGQTICTEAKLCL
Ga0187851_100237096	F025900	AGGAG	VPVSRTRTPKKNRNNLAPKSKEAQRKIRRWSFVVEVTVGDTTKTFQPPALTIGNLGSARAAADTIRADIASLDQFKDAKVVVKPRAEETVSLTILNQINGLNEQSRLLTFALKRAVTDVVKLDTAGCPCREIEDEAARQVEFDRHVTERLGKYVMEEQQAMRRQQMIDAGIDPDQVLNNQLPAEQVPAEFQAAPASEEAPAEQVNTDPFPDGEFGKEAA
Ga0187851_100237097	F050080	AGGAGG	MASSFVSRQRNQQRNTPPVAIKPFVRAAQNFALQTKQNREILDGQGQSVGTEVYTEIRMQGTVLAVRDEGIEDEFGRQYIGLVIQINPDKDRFVQTADPTLHAQILALKQGDLVYVTSEWHRNSSGRGFHARAKTITVLAPASTPGPVAVESTADELASAA
Ga0187851_100237099	F062380	GAGG	MPSDFNDFGDFEELLFADPGSHGACKLIIAYHPAFPLALGRIECASGLPIDIQINVLESTPLLHTAELVFTGKTTDLCELQMRLTQWTAQFPNLPPMPEEALYARDNPSAPSGPPEGVDQSGV

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0187851_10023709

Overview

Ecosystem & Geography

Associated Families

Sequences