NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187890_10006014

Scaffold Ga0187890_10006014


Overview

Basic Information
Taxon OID3300018044 Open in IMG/M
Scaffold IDGa0187890_10006014 Open in IMG/M
Source Dataset NamePeatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_21_10
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8005
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (50.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA4(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000335Metagenome / Metatranscriptome1276Y
F000451Metagenome / Metatranscriptome1124Y
F002448Metagenome / Metatranscriptome558Y
F046491Metagenome / Metatranscriptome151Y

Sequences

Protein IDFamilyRBSSequence
Ga0187890_100060141F046491N/ADWSATAANVNLSMQNAFGESVEYQPMQAGEAVGTASTITIIRRIRERMEAGAVASVEEIDVNPTDLPALPARGDVVEAWGAVFTVTTVRQPDPYGMIHLTLTMQPPSQ
Ga0187890_100060142F002448N/AMINPKTILAEWVTALQALPNLVEALGGNSAQIQFYSENITVFGQPTQANVRLAVLSMPPGSLMIVWNGSGPGRLGNALVFVHHFALFLRAPETANVGYEDLWTWIVEDIPENSTLKMLHTQIDPNAEPMDFYLPEARRNTIVISADGTTFEYFEVAVRLIEATNP
Ga0187890_100060147F000451AGGAGMGFRHQPVVRHARFVYSPYTSDEMLGFGELLADTIRQRIQSGMNIYDQAAAALKPGRDGHKGYPDMKTARGLQPIRDWTWTGHTLRCLKVLVVNENRATLGFLDESLPGRMQTASEIAFYGNQIERMWGVSERDRAITVSAMENYRPLVVAVDGANGMDDQERAAVERASRGFRQIGAQQYFSGLKRVA
Ga0187890_100060149F000335N/AMPGNLLYADPTGVMPFSLSTAFTEMREYVLLQNQYHDGTIHRSQLAQTSRRSYRQTKRLNATALAALYAFLEAQNGGLLPFFFYDPFDVIAGHLPGSNYDPTGANVQGRVTVVFRNNAWTQATDVCRSNVSGLELVEVA
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