Scaffold Ga0187887_10093446

Overview

Basic Information

• Taxon OID: 3300018043
• Scaffold ID: Ga0187887_10093446
• Source Dataset Name: Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_10
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1815
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Nematoda → Chromadorea → Rhabditida → Tylenchina → Panagrolaimomorpha → Strongyloidoidea → Steinernematidae → Steinernema → Steinernema glaseri (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Minnesota
• Coordinates
  • Lat. (^o): 47.5028
  • Long. (^o): -93.4828

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024018	Metagenome	207	N
F036061	Metagenome	170	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0187887_100934462	F036061	GGAGG	VIENWKNPAITQQDIRATETPAGLFSDPPFGHLFAGPTDLAVAIAAGFRTVLVPPDTPLFCFYCHDTEAPEYRLRRKGGKYVALCHRPGTIEGCWDRDVAPMCEYKDHEGIQCDQVAEWRVAFGKDMLMSTHRCLIHVPPALSDVSEHRVFPI
Ga0187887_100934463	F024018	AGGAG	LSAHPTPFLDLAKLLAADNVSTADRIWEVAFEAKMPAELITEEDLKCPDCGVVHDPDIEHARTVSDVVTILGGPDAQPSVDRVREHILSQEVRDGLRMTDFILTGVKLLAAAEVV