Scaffold Ga0187887

Basic Information
Taxon OID	3300018043 Open in IMG/M
Scaffold ID	Ga0187887_10025341 Open in IMG/M
Source Dataset Name	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_10
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_10

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	3782
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

3782

Total Scaffold Genes

5 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

3 (60.00%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium SCN 57-15	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium SCN 57-15

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location Name	USA: Minnesota
Coordinates	Lat. (^o)	47.5028	Long. (^o)	-93.4828	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

USA: Minnesota

Coordinates

Lat. (^o)

47.5028

Long. (^o)

-93.4828

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F037652	Metagenome / Metatranscriptome	167	N
F057234	Metagenome	136	N
F064316	Metagenome	128	N
F080330	Metagenome	115	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0187887_100253412	F057234	GAG	MDKIEFKLDGPSVIAPARGCILLARFQLVGRPELGSIFCDYGLLAGRSLQLFNCRAKTFLMDCPVPCDYALKVDAMTLPGERVVEMFQLQAPPWYYRLEADAVALARQSQDLAEDAGLAGLFSSLIQ
Ga0187887_100253413	F064316	N/A	MLGNAQEEATLEVTDPKAVKPARKVGALKMLLRQFEATGNPPLQGEEVLPPKLVGDGNYHWYPLAWLRWLAKWERLKTLGLVIILLGLLAGYGLIRQRRSCQVTLPEPSTEMLLKAKGFDAFNQNQAEAFILFVANAANQASIEGMPNLNLLEGSIDSAIYLRLQQKGMSQQLNNILPADFPIYTLYISEVTRWRYNPATRIVSACVKGFRLSHTLSGKSGMEPYRAQIEIFWEPMSNRNKWGYYVQRLDEFYGAAAQAYDAELKTRDRTGA
Ga0187887_100253414	F037652	GGA	MPYTHFWSEEPEARRRAWRPTDEVRRRLMRLWVIQALLLAAIVLVAGALTRESKRVPPIFARLPNGVIFETTTGDLQMDRLARTELVNNVLQILYYQEGSFNYLATVRQNVKPQLLGRFRAEMQNASQQTNSTVYLNVVETFEAFNAPAKGFDAVTKGVLSKRSNQESASAPIYIRTRWLLAGDRYLLSRVEEIRPGDYYELFLAEKERLKKLSKPELERELGVRKNQEIPLPKRNQLF
Ga0187887_100253415	F080330	AGGA	VKKTAPFILLLLAAGTVLAGDPFAGQDASPAGLADGVRLSTRVVENVYLMPEQITKLIFPKAVEEVSVNTQVINIGRNPPDSKEYYLLLSPKVAQGDVDMHVVLEGKTYTFRLIVGRDKVNYRKTYTAEGGGSGRSLRKVPPLAPTEINTTRLIHIINQSMRDPNYASVVAKDIGSSPQGATYLWDGAEVVLQSAWHYYPQDVVILQVEVHNPTSRAVYLSATQLEPYIANTTFHYLLTQQGTKLLLPGQTDIKYIFLQGYGIDL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0187887_10025341

Overview

Ecosystem & Geography

Associated Families

Sequences