Scaffold Ga0181601_10211236

Overview

Basic Information

• Taxon OID: 3300018041
• Scaffold ID: Ga0181601_10211236
• Source Dataset Name: Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041407BS metaG (megahit assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1132
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.972
  • Long. (^o): -81.028
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008235	Metagenome / Metatranscriptome	336	N
F016959	Metagenome / Metatranscriptome	243	N
F045698	Metagenome / Metatranscriptome	152	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181601_102112362	F016959	AGGA	MSKPQWPTLKARLQHPLKDELTALHQLKQVLPLSKQAQKLYDKLSKKSIQEKD
Ga0181601_102112363	F008235	N/A	MINYLKNLFKKKTEPETTPVEQPKNNYYLAKYRANVSLHITYNQLDTDGYHEYRQYENIESDDNVVFLEQKNKSIKTYQEVISNINEQLKDNSSEYIMVQKVFLFKKSDFINAKIIIKDNDLYESTN
Ga0181601_102112364	F045698	N/A	MNLPTKQPDVIELTKSIRETHYQLQLDYQALMLKATTLQAENEELKERLDKIAEKIQLDI