Scaffold Ga0181601_10116008

Overview

Basic Information

• Taxon OID: 3300018041
• Scaffold ID: Ga0181601_10116008
• Source Dataset Name: Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041407BS metaG (megahit assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1700
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.972
  • Long. (^o): -81.028
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004343	Metagenome / Metatranscriptome	442	Y
F013295	Metagenome	272	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181601_101160085	F013295	AGGGGG	MKINNLTPKQFARREIIKYLRDLFDNPQKYIQGFDDLTHRQQEEILRFVSLDEHRIDKLLNLPMGESXHSTKKX
Ga0181601_101160086	F004343	GGGGG	MTQHKEMIEEAKRLLNSKRENIPSMSKDFGKDYWVLTYPCGKIVKTYEDKRKKDVIVQESYLXIYK