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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300018041 Open in IMG/M |
| Scaffold ID | Ga0181601_10008543 Open in IMG/M |
| Source Dataset Name | Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041407BS metaG (megahit assembly) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 8369 |
| Total Scaffold Genes | 13 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 9 (69.23%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Georgia | |||||||
| Coordinates | Lat. (o) | 31.972 | Long. (o) | -81.028 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F003361 | Metagenome / Metatranscriptome | 492 | Y |
| F006940 | Metagenome / Metatranscriptome | 361 | Y |
| F016400 | Metagenome / Metatranscriptome | 247 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0181601_1000854310 | F006940 | GAGG | MKRLKLDDISNAPALPTKEIEISQWDATVIVTGLTKADAVEINKLSEVDGVRDEVLFEKHLLLKGLKDPEFNTLDQVEEFYSKATPTIVDKVLVGIYRCMAWTKEDQANIADQFPE |
| Ga0181601_1000854313 | F016400 | AGG | MSVPFDSNVNLTVEIAFDSNPLDSSQSFTDVSTYLRRFSINRGRATNLSDFNPASVTVVLDNSDNRFSPNQTTHYYDAVNNRSKIQPLKRIRIKAAYGGSTYTLFHGFVESFPVNYPAQGSDAETKLQCVDAFKLFNNATLNGFGWQLGISKLGTTTRLTLTQAQELSSVRAKNILDSFGYTNQAISTGQLEVQVQPETDSVLAALRAVELAENGTFFIAANGDATFRDRNYRLTNTTTPEANFGQGVGELNYVDIKTSYDDEKIINTVQRTRSGGTTQIAV |
| Ga0181601_100085435 | F003361 | AGG | MKLTLNGALDLSRAINSQSIWNKRSNDFFNKLALELKEDSLNALENQPSPRSQAGRGNKNTGNTRRSVFTAKLGNTNRLRMSEGFKLASSSPTAPFIHGKPIYRGFSPVKRTKPFFPPYKEGSSLAKWAKRGTPKLNPFLVARAISKRGLKMKPFIGGVVYEKQKEIKAGAEDMLESIARDIARSVK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |