Scaffold Ga0187855_10163394

Overview

Basic Information

• Taxon OID: 3300018038
• Scaffold ID: Ga0187855_10163394
• Source Dataset Name: Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_10
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1324
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Minnesota
• Coordinates
  • Lat. (^o): 47.5028
  • Long. (^o): -93.4828

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001473	Metagenome / Metatranscriptome	688	Y
F019896	Metagenome / Metatranscriptome	227	Y
F025071	Metagenome / Metatranscriptome	203	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0187855_101633941	F019896	N/A	PTAVSLRGLKSDRSLWGFQNSQLGVDVASRLKSDGTPIPVKIRRCEPGVAEVAAGGARIGVMALELPPANADTKKAQPTVLQIVFPVDRSGNLTATLVL
Ga0187855_101633942	F001473	GAG	METRYQTVGEMYERLQLMIRQRGDTGFRLAVRDAVLQPRNPFEPANKRRPKPALAIVISVFLALAFVFSYFSFHHGA
Ga0187855_101633944	F025071	GAGG	MIHQSESPRHEMTSGEAGVVGAVLGFGLVALALYLAIARYHIRKEQLVEAGLYVFIVTAAIVGPVLRKFVRSGTRKKRPPFVIPARKDERAI