Scaffold Ga0187883_10114681

Overview

Basic Information

• Taxon OID: 3300018037
• Scaffold ID: Ga0187883_10114681
• Source Dataset Name: Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_10
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1395
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Minnesota
• Coordinates
  • Lat. (^o): 47.5028
  • Long. (^o): -93.4828

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007233	Metagenome / Metatranscriptome	355	Y
F015917	Metagenome / Metatranscriptome	251	Y
F033134	Metagenome	178	Y
F037842	Metagenome / Metatranscriptome	167	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0187883_101146811	F037842	AGGAGG	LKQKTVKARGEGVEYPALISKVIRQVRFVNDEDYTALTIEFDDSTLVSFRFKASIAFSIDPELSTVKGGNIVRWRQL
Ga0187883_101146812	F033134	AGGA	MKQEQESKQLITFNSLHIEVLGPKELGNSQLAIRGVTEFLHGVELDVRRLLRERAEVSPILEGFRLRFG
Ga0187883_101146813	F007233	GGAG	MANRKQKERKRQLNLDTFSDGIKGRVLEAVSISNELECRYISLEFEDKTELTITLDTRLTGKLELFDCKTGDHRLVRKIGLIPDDAPVWRPKD
Ga0187883_101146814	F015917	N/A	GNITVTQISPKEREILAQKIKKRHNRLRNRYREIHKKVVDWVSHSVEEGNVYVCIRFMDKTEFSLQFSPQILTDGIDLSDMSTGNFKLIREYYRRRDE