Scaffold Ga0181600_10081237

Overview

Basic Information

• Taxon OID: 3300018036
• Scaffold ID: Ga0181600_10081237
• Source Dataset Name: Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041406US metaG (megahit assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1963
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.972
  • Long. (^o): -81.028
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007006	Metagenome / Metatranscriptome	360	Y
F020467	Metagenome / Metatranscriptome	224	Y
F028356	Metagenome / Metatranscriptome	192	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181600_100812373	F020467	AGGA	MHKRPSLTEAKAVLTQHSPATMEEYELLKESHGEFFAARFIVDIVDHFNHLQEKVING
Ga0181600_100812375	F028356	GAGG	MFFKLTSRNAYRDLIRNSRRICIADISDQEKSSAFQELWQLLHQKLDETERSLNVQPAYAQRCDHWNQRDVRSIKPVKNENNPWLRFKREFVDAMSQDVELHAKRVSTALAWFYADPWKDDWIR
Ga0181600_100812377	F007006	GAGG	MEKALQEEIRKEINRIVDLMIQADSIRESIAELKKDIKNEYGLPVTTITKVATIIRKQNLEEEEQKWEEIK