Scaffold Ga0181600_10021644

Overview

Basic Information

• Taxon OID: 3300018036
• Scaffold ID: Ga0181600_10021644
• Source Dataset Name: Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041406US metaG (megahit assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4509
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (84.62%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.972
  • Long. (^o): -81.028
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F049595	Metagenome / Metatranscriptome	146	N
F058958	Metagenome / Metatranscriptome	134	N
F067690	Metagenome / Metatranscriptome	125	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181600_100216441	F058958	N/A	GEFVMTLRNQIIEQLGGRLFTATFTKADGSIRKAYGQIIADDRLTDEHPNVITFIDYSIAKEMHDAGKANVRRMKLEAGTVYTIKSGKTIISNAS
Ga0181600_1002164410	F067690	GGAGG	MDKVIELELELRDGGSYYLCDSKFSVMSGKIRRHVNAVESYYQDYASVNGFAVKHTYEEVVDMIRTAKLGYYGMKARGMK
Ga0181600_1002164411	F049595	AGGGGG	MQQVDYRFENHGSIFLCQPLNGAAKDNLDQACEGTDDFHIRWGDALVIDHRFANDIAQQLIEEGWIIE