Scaffold Ga0181600

Basic Information
Taxon OID	3300018036 Open in IMG/M
Scaffold ID	Ga0181600_10003671 Open in IMG/M
Source Dataset Name	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041406US metaG (megahit assembly)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041406US metaG (megahit assembly)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	11699
Total Scaffold Genes	20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (5.00%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (20.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

11699

Total Scaffold Genes

20 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

1 (5.00%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (20.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	31.972	Long. (^o)	-81.028	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Georgia

Coordinates

Lat. (^o)

31.972

Long. (^o)

-81.028

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010083	Metagenome / Metatranscriptome	308	N
F018354	Metagenome / Metatranscriptome	235	Y
F031470	Metagenome / Metatranscriptome	182	N
F050346	Metagenome / Metatranscriptome	145	Y
F081280	Metagenome / Metatranscriptome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181600_1000367117	F018354	N/A	MRHETFAMEVSPLDFEGIKNIDFKVQVDDTDKMVIVTMSRYFIGDVHDECVKKAKKIYKGYRVKTNVAF
Ga0181600_1000367118	F081280	AGG	MWHSRLTMEKTTIEVPVNPFHYDGLRSIGIPIKVDHKEQMIYVDFMSNQGTKIMENFLSEVGHTFPGYEIRVARLDQ
Ga0181600_100036713	F031470	N/A	MSSYMRLNDGISLNKINPFADPMEFTPGVPLGGAYKTVYAQSKQPQMALANEVRPVGDALGGIIAPQDLEPSQGCEKTIAAGWRTPYYCTPGSQDYPLNRKAYPERNYSLPPWLNVVAPMKDNIITGTEGMIGSMDVANAAGNTATCILIALSILTLVKFL
Ga0181600_100036715	F010083	N/A	MVKLIGWWYNENPYRVTMPLKMIYDINTKKDCLFPTSEWKRIMESWPLMKSGEVYSMCYYPDFRDAMYVLRRRKPECVENIRYEQEYTYRGSPYSLVSRDPWRKVDYIEEEEEPRMKGPTMIQKVEAVMENREVIMWDTARFLRYAGPRSDFHNVKDIRMMDLFDANEEVPDEWRVYMFGNTIIIKKDDLLTPQTLVPDRI
Ga0181600_100036717	F050346	N/A	MITKPDEVPRSLGNVYSYKQGYSSWKEFVSARGETGFKQFLNDLYARDLKISRTQSSKCS

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0181600_10003671

Overview

Ecosystem & Geography

Associated Families

Sequences