Scaffold Ga0187863_10009899

Overview

Basic Information

• Taxon OID: 3300018034
• Scaffold ID: Ga0187863_10009899
• Source Dataset Name: Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_10
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6244
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (60.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Minnesota
• Coordinates
  • Lat. (^o): 47.5028
  • Long. (^o): -93.4828

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003832	Metagenome / Metatranscriptome	466	Y
F005268	Metagenome / Metatranscriptome	406	Y
F014888	Metagenome / Metatranscriptome	259	Y
F025325	Metagenome / Metatranscriptome	202	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0187863_100098994	F025325	AGGAGG	MLSDGSKKRLEKTWEKLVSAAAMEADPEKLAMMMEEIFAFLEERKRTLSLPQTPSGFCERQTET
Ga0187863_100098995	F005268	N/A	MNDNEDEPDELQVWSVLREAGLVEIRLDEFAQRIRDVKHMVTGRLFDLLNINTGVQERESAAYSLGTLKGLELKVLANAPKPPDPSEM
Ga0187863_100098996	F003832	GAG	MMKSAAKQLSTAGNWPPQEGQIVSFRTSTASDASETAILKEVHWGLVWRDFVLEDGRVVPEHRILGCPQPQAWRKISQVTDQEREECEERLLSMAGAGMDPRERDQSFWAELNQYLAYTYLRFKPGGSRIQVQDQDQKREKDR
Ga0187863_100098998	F014888	AGGAG	MNKVMEVLLTVVALAGLYSAISTSTAAPGNSAIRAESAVVLADGSDPMPLCRPGRCPKQV