Scaffold Ga0187867

Basic Information
Taxon OID	3300018033 Open in IMG/M
Scaffold ID	Ga0187867_10028744 Open in IMG/M
Source Dataset Name	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_13_10
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_13_10

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	3486
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (88.89%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (100.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

3486

Total Scaffold Genes

9 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

8 (88.89%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (100.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location Name	USA: Minnesota
Coordinates	Lat. (^o)	47.5028	Long. (^o)	-93.4828	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

USA: Minnesota

Coordinates

Lat. (^o)

47.5028

Long. (^o)

-93.4828

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002761	Metagenome / Metatranscriptome	531	Y
F005112	Metagenome / Metatranscriptome	411	Y
F016632	Metagenome / Metatranscriptome	245	Y
F025427	Metagenome / Metatranscriptome	201	Y
F027079	Metagenome / Metatranscriptome	195	Y
F039911	Metagenome / Metatranscriptome	162	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0187867_100287441	F005112	AGGAG	MSLTARYKLFWAACIAALCGLAFWKNSKSYPRKSRLWRLGKSVIDTGLVLLMVLYAPALLLMYVVIWLTSPFKNRIMQSTAAFASILAVSHLAGIVFEAVAVLGVFAVDLLTGQVVARMDRRERNKLGKAA
Ga0187867_100287442	F039911	AGGAG	MKYTIAALLAVVVAIAGYFSIRHLTRKDLGFTPMKRYATKLAKTLLHTEATAAQEAGVSPAA
Ga0187867_100287443	F002761	AGGAGG	MTFTPSSTSSYTAGAVFWSMVWAGIGKLNELARFVGFKRARPRESALRWINSHKVITLTATEVVNYSVHGITSPLGVTFALGGTIVNTLMVAFVVPIWCRLSRLESRLS
Ga0187867_100287444	F025427	AGGAG	MQPGEMEELLASLRTCPIQKKGLFWRLLKLYWKKLLFIALMLVLPGGLVVLFLCAAAWALNWEHEMTAYMDETYKKWKEEHDVHSE
Ga0187867_100287445	F027079	GAGG	VIKSFLNLCLLLFLDMLAYMVAIVAAAAVAWAAVRGARWIFAALRKVVIALRARRTKKEMHAHATR
Ga0187867_100287446	F016632	AGGAGG	LTGILEVFALAEIGSGISFLASWRNKVLKAKVNYFRQPNNRSSPFDKLLRAKVGRAFTRQDRLRLQLADGLVNLIRKLVQYDAFRQVVRGLALAHSPMRQALRKKRGRPW

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0187867_10028744

Overview

Ecosystem & Geography

Associated Families

Sequences