Scaffold Ga0184634_10000278

Overview

Basic Information

• Taxon OID: 3300018031
• Scaffold ID: Ga0184634_10000278
• Source Dataset Name: Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12610
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (10.53%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.9195
  • Long. (^o): -106.9496

Associated Families

Family	Category	Number of Sequences	3D Structure?
F037804	Metagenome	167	N
F072503	Metagenome / Metatranscriptome	121	Y
F106125	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0184634_1000027813	F072503	N/A	MSINTQKSNELEERIKNFLIKDPNITQQIVDNIEDRGKSAIVKQNPDLITATECLVVTKMSCDLSIRD
Ga0184634_1000027814	F037804	N/A	LKDIEEDLEEFANYILEALKESQGEVSNWDEILRKWKLIEKKKDQEARRKLK
Ga0184634_1000027816	F106125	N/A	VGIDIKGLDYVQNYLNELASSADPNSFNEWANRVGGTAKEICNDPECKRIKLIKNGYGKVKFQFADKEAVDCVIQAINTHPNSMPTVQQEIFKGFTTELEKIKRAF