Scaffold Ga0184608_10176892

Overview

Basic Information

• Taxon OID: 3300018028
• Scaffold ID: Ga0184608_10176892
• Source Dataset Name: Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 929
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.9195
  • Long. (^o): -106.9496

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005536	Metagenome	397	Y
F007604	Metagenome	348	Y
F031780	Metagenome	181	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0184608_101768921	F031780	AGGAGG	MLATLVGLSMLLALVGGTATLASVLLGRRLRARLARRHPQQAVARQHTQQARRLAAEWPLLAQTLGLGYRDQWTRQHRFPPAKFMADDQGVTATVAAIAGAGPADYQH
Ga0184608_101768922	F005536	AGGGGG	MWDDSPDCPACASGWHSRCRWPDQADDGDGELVERCCDGLLIARRRRPLWTRGGVR
Ga0184608_101768923	F007604	AGGAG	MMQNDPTRRSALSVALLAHTGTRYEVDAWMAGNGQANGSVRYDTDRAWFTIQGRPTALRELATVLVRCAELTEQTYPTPAAPVVEGVAG