Scaffold Ga0184608_10000273

Overview

Basic Information

• Taxon OID: 3300018028
• Scaffold ID: Ga0184608_10000273
• Source Dataset Name: Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13289
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (72.22%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.9195
  • Long. (^o): -106.9496

Associated Families

Family	Category	Number of Sequences	3D Structure?
F045616	Metagenome / Metatranscriptome	152	Y
F079697	Metagenome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0184608_1000027316	F045616	GGAGG	MHRRHGYRHGCGPGFGRRRVPDREEWLRHLEEYQKDLEQEVADVADLVRRLKEEKKETTE
Ga0184608_100002733	F079697	N/A	MSVPAVDALTGDELDRRSARKDGREIVALRCVQANGGFAIECDVYPADGLRVEPLRPGPYRFASREEANAFIAEAVRALEFLGCEIG