Scaffold Ga0184608_10000006

Overview

Basic Information

• Taxon OID: 3300018028
• Scaffold ID: Ga0184608_10000006
• Source Dataset Name: Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 44093
• Total Scaffold Genes: 49
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 35 (71.43%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.9195
  • Long. (^o): -106.9496

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008857	Metagenome / Metatranscriptome	327	Y
F021269	Metagenome / Metatranscriptome	219	N
F046731	Metagenome	151	Y
F095219	Metagenome / Metatranscriptome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0184608_1000000620	F095219	N/A	VSSDGGFSAGLAIGLLVVVVVVLVLLATVPIGNDAKPIIDIRF
Ga0184608_1000000632	F021269	N/A	MDSNNALDAILALRAIWEQKRGRVTLADLEILVRRCVRTRGAAALPPERWRGRPWRATTRHEVVFEA
Ga0184608_1000000633	F046731	AGGAGG	MRRLILAATLGLSFVFSLGQSTALAASATSQTIDFNGYANFSSILGGGISGPVVLSGSISDGQLGSLRGSANFPLRDEKLSVAPSTSIALTTERLSIGWYRYTCDPFVGCVYENGVSTFERTYGSGPVDIRIGSLRGNGTLSLGTNASCVAACPPAGAYWYAPNGFWQLQGAALSSQDAGTLGANGPAPTIH
Ga0184608_1000000640	F008857	GGAG	MAGGPWDRAGVDRETWYAVRIMAVAIRETARLPIDPTEKNEALPADHEKLGEYADRLVSAVEDGDPETIAMLLRRQPRSAG