Scaffold Ga0184605_10001736

Overview

Basic Information

• Taxon OID: 3300018027
• Scaffold ID: Ga0184605_10001736
• Source Dataset Name: Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_coex
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7124
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.9195
  • Long. (^o): -106.9496

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015372	Metagenome	255	Y
F048511	Metagenome / Metatranscriptome	148	N
F078484	Metagenome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0184605_100017362	F015372	AGGAGG	MDDIQKRADDKAWDEKQNRWISDANRRTEDGLSGESLAALYGLHVSPDDEPLYDVDEMSDVDDRETLGNKIISRLIQIGDTISRNRDLPDDVRQRWTTALQETYASDPKSVTMLRELRREVDSWEEIDPQSELSLVDSAIGAVATMIEIYQRRFNT
Ga0184605_100017366	F078484	GGAGG	MNGKFLLFGRDEIENSLIRFVDRKISEQRRDERRFAEQRTTKHKVQARNSCIADARSYRVARRFPVLAIAQFDWKALIPTRRTYLFGIDWLKKLRKDQLKHWRPAGDLS
Ga0184605_100017369	F048511	N/A	SESSMSTKITSLYVCGNSYSAATQATGYQAWPGKLSRRLGFTYIQANNKAQPSAQLLTITSPPRPGLIAQLQSMPTGSKAGALLVIWLFPVLDKPLRVAQYRPAYTSGIDIAYQQGFRSVLMPNLPDLTKTIYYQRTYSRKKLRALRKAFTAFNAQYSTMIKNFRRRHRNTKYATVDVFRLWNGTGTVADGLHPNPSTHRLFALWFWNVVK