Scaffold Ga0184605

Basic Information
Taxon OID	3300018027 Open in IMG/M
Scaffold ID	Ga0184605_10000040 Open in IMG/M
Source Dataset Name	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_coex
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300018027 Open in IMG/M

Scaffold ID

Ga0184605_10000040 Open in IMG/M

Source Dataset Name

Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_coex

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	34611
Total Scaffold Genes	36 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	21 (58.33%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

34611

Total Scaffold Genes

36 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

21 (58.33%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (60.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location Name	USA: East River, Colorado
Coordinates	Lat. (^o)	38.9195	Long. (^o)	-106.9496	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: East River, Colorado

Coordinates

Lat. (^o)

38.9195

Long. (^o)

-106.9496

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000531	Metagenome / Metatranscriptome	1046	Y
F001330	Metagenome / Metatranscriptome	721	Y
F002984	Metagenome / Metatranscriptome	515	Y
F018437	Metagenome	235	Y
F045028	Metagenome / Metatranscriptome	153	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0184605_1000004010	F000531	GGAGG	LTYRQFAAELGAPVTEAAVKKWPQRNKFPADVARLIVTKAKDRGLVGVTLEWVMWAEGPKPHKAPKGTHNRSRQPAALTEAGHQEPVGRLGAGIAEALRADLSHNEFGQWSSVEVQHTVIWALKDLARRLRVLRFDMGKTFDLTDQWARKTGLPVRPSEGSPAP
Ga0184605_1000004017	F018437	N/A	MRSRVSCAALIAVVLACDAGLHPTTACPGICGTVTFRGAVPDSTQAVYVVAYHTFPHSRDSLFTFQPPVTSLQGLPLDGAPAFYALPVDAGRYEWVLAVWVKQGFTLATADSTLREAGYYRDPADTSQPGVLTVDTSRPDSIDFMIDFGQMHPPCRYYDPPCP
Ga0184605_1000004019	F001330	N/A	MILPCGVRLALLFSASQAAPIAGTWELTRIFRSGPTPATRAVPVDSTVYIRITLETHPGDWISGRLYRRFHGEPDRSKVEAGPLRGEGRFIIGVELGRPAWARARTAAWLVGDTLRFGTSLVPDADSLELRRVTPDAPYPATVLDVVTRP
Ga0184605_100000405	F045028	AGGA	MTSNRIFVRRWLIPLALLASSCSDPSPVGVGPETPGLLAGRVKSSGTSLVQCARVPRDSVTQVIGPAGGWFVVGANVLWVDSLALSAPVKITAVAPSDTVRRVRLRPDGLVFKTGTHGLGAVVATNLENCKLRHNEVPRIANVTDALSVVEYLESPTAAVDSLLVMRFRVDTGGWTPYWAFGALRHFSNYAVAW
Ga0184605_100000406	F002984	AGGA	MQSENRMSVRRSLIPFTLLAGAIAALSCGDPSPVGVDLQAPAFQKGGRWDTPLPTGSGLVPCSQGYDSVTQVIGPAGGLIAVGSHFLWVDSMALSDPVSITAVAPAGTARWVRFRPDGLRFRTNGAGWSALLYTSFRDCGLPMADTLRIAQVTDSLNVIRYLAPPDSTWVRVRKKAWSRGNQFVAGVLHHFSQYAVAW

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0184605_10000040

Overview

Ecosystem & Geography

Associated Families

Sequences