Scaffold Ga0184605

Basic Information
Taxon OID	3300018027 Open in IMG/M
Scaffold ID	Ga0184605_10000005 Open in IMG/M
Source Dataset Name	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_coex
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300018027 Open in IMG/M

Scaffold ID

Ga0184605_10000005 Open in IMG/M

Source Dataset Name

Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_coex

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	106641
Total Scaffold Genes	96 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	62 (64.58%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

106641

Total Scaffold Genes

96 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

62 (64.58%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location Name	USA: East River, Colorado
Coordinates	Lat. (^o)	38.9195	Long. (^o)	-106.9496	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: East River, Colorado

Coordinates

Lat. (^o)

38.9195

Long. (^o)

-106.9496

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000871	Metagenome / Metatranscriptome	851	Y
F003589	Metagenome	478	Y
F005262	Metagenome / Metatranscriptome	406	Y
F036626	Metagenome / Metatranscriptome	169	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0184605_100000052	F005262	GAGG	MCARLLSLLAAVALIAPAARVTGQTASSHVYWVGFYQALPGKAAAYNKALSDIADPVLDELVRRKLMVSHVQLVQHSGAGENTNLVILEFPNWAALDTYDAKLNEAAQAILHKPWSEATVGFAELRRLVRIELYTPAAQPR
Ga0184605_1000000521	F003589	AGGAGG	LNSHEWPDAKLQEVAQRLGARAAQRLDVERTAQAVVARLRTEPRAAVRGLGGMRPWVRIAAALVTVVAAGVIVRSIRLDHTTTTALTTAAGAELNDLSADQLRQLLQAVGGGQPSVEQETVSSQDVGLEDLSARELQALLQSMEG
Ga0184605_1000000532	F000871	AGAAGG	MRWLCFLLLASPVAAAQTAGPKPLRFDVAALPATRDSFVFRLRGEDRGWAVWQYEVRTLETTQEVIYTATSEFRPIEQERLRVVLNRLTGDPIATFHHIDLFSPQSDTVMMEHDLDVRRGAIAGRRRIGTRRGEVLIVPVSRPFAPGTVLSDYVFLAGAVTNAEPGDSLAVPAYKEFADSLATLSFVAEAPATIDVPAGRFDVLPLRSGAFRIYTTRGTPRRVVKGETLTGAFSFELVHSGPVVPSSE
Ga0184605_100000056	F036626	GAGG	VDQERLLKRVWLVNGLLLAVLFAALAIWLVVEVGSSWFRRHSAVITATHGAPADRASRAVRYDPPQSIWKSTTRIVLIRYGEAFERPEAKFASSDSYGERYTLYVNAIFLEPGGGPGHLLLDRPALIRSVNFPRSKDDSLQAWVTYEIAFEDTDGDGGLDEDDAASLYVSDLHGGSFRRVLPKGWSVLAHEPLDGRRIVVLALRSAEIGDRRSLEETPERAFFYDVQTGRAEPYAALDSLTARAARIVGR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0184605_10000005

Overview

Ecosystem & Geography

Associated Families

Sequences