Scaffold Ga0184605_10000001

Overview

Basic Information

• Taxon OID: 3300018027
• Scaffold ID: Ga0184605_10000001
• Source Dataset Name: Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_coex
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 199320
• Total Scaffold Genes: 196
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 138 (70.41%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.9195
  • Long. (^o): -106.9496

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000484	Metagenome / Metatranscriptome	1088	Y
F001683	Metagenome / Metatranscriptome	652	Y
F001801	Metagenome / Metatranscriptome	632	Y
F004389	Metagenome / Metatranscriptome	440	Y
F004535	Metagenome / Metatranscriptome	434	Y
F017521	Metagenome / Metatranscriptome	240	Y
F024279	Metagenome / Metatranscriptome	206	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0184605_10000001127	F024279	AGAAG	MRPLTLALAVLFPAATPAATQQAVDTTVAVQGFLQQDDEFGIWTIVVPLPLQVLGTRTFVLPVVGKRNRWTRYRNRYIEATGPVTRLPERGDPGIGMEIVKAKEIEPPGTARSTVDHGMTLHADVSLSVIPNRFSWHDDTGSQTGVNPMLLYTIVNRRAAPIFFFLPNDDFLCVTITPAKESAGWDSTTHVKNPDARRFAVQRAGGFRDAIHFPLDAAPRPGRYLAHVGICAVDDYDVTAEFQVQ
Ga0184605_10000001142	F017521	N/A	MADESNVLPTSRIARWIGIGAVIAFTVALYFHDGRRVPPLTGAPSAAPTGQPDN
Ga0184605_100000014	F001801	AGG	MKIFLRHLLLCAMPLLFGAGAGYYFTTIQGSCGAMVGALFSGKCAGRQRQYQTRFQFAGAGFGTLLGATLGTWLEHRRRRTVQPTTSEGEPS
Ga0184605_1000000147	F001683	N/A	VDHESLVIILSTGGSPLDRTALDALADVAVTWVRVEREGEAACLAARLRHGDAPDDFRQRVRQWGAARGWAVTVAPGGRPR
Ga0184605_100000018	F000484	GGA	VKGAVAATLLAALAACGPANPCTSSQMHLHTRFAQPYVGHWVVARGDTLTLPQLGDRFKLGTVVLDTARVVVGRACRFKGVLMFTVPRAETLAVTWSGTPEQALIYGWPVDLGPFAGIGAVRVGDSLAGAILFDSRLGVEVRAGVTARFIAGRARR
Ga0184605_1000000186	F004535	AGGA	MQAAGFWFVRRATRAVVVAVGLMVLLALQPEPARPTGADSVRSGSHARALLLSDQARRYLALQYRSYPTEFMGCMIGEIHGNAVIVRRIAPADVEPTHSTQTRVVPEQTCEDAGWAGTVGMIHSHPDGDRCWYYFPGTSVASSDATSFGRQSYPVDAIMCGDRVVWVSRDMVQQEVPLVVRDTRLQPHRSQRGNRVHAGASAPDGADD
Ga0184605_1000000195	F004389	GGAGG	MRRNIRVAALTTILLVPLIVSAPAGWRAVGSAQPAASYTFQGTVRAINARTGTLELVTGVGMSLRLVRMTTAATTRLVATGAALRVGDLKPGDVVRAECRRTAAGLVADRIEKLEVATP