Scaffold Ga0187857_10042857

Overview

Basic Information

• Taxon OID: 3300018026
• Scaffold ID: Ga0187857_10042857
• Source Dataset Name: Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_100
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2358
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Minnesota
• Coordinates
  • Lat. (^o): 47.5028
  • Long. (^o): -93.4828

Associated Families

Family	Category	Number of Sequences	3D Structure?
F039920	Metagenome	162	N
F044872	Metagenome	153	N
F050080	Metagenome	145	N
F062380	Metagenome	130	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0187857_100428571	F050080	AGGAGG	MASSFVSRQRNQQRNTPPVAIKPFVRAAQNFALQTKQNREILDGQGQSVGTEVYTEIRMQGTVLAVRDEGIEDEFGRQYIGLVIQINPDKDRFVQTADPTLHAQILALKQGDLVYVTSEWHRNSSGRGFHARAKTITVLAPASTPGPVAVEATADVFASAA
Ga0187857_100428572	F062380	GAGG	MPSDFNDFGDFEELLFADPGSRGACKLIIAYHPAFPLALGRIECASGLPIDVRVNVLESTPLLHTAELVFTGKTTDLCELQMRLTQWAAQFPHLSPMPEEALYARDNPSAPSGPPEGVDQSGV
Ga0187857_100428573	F044872	GGAGG	MHTGLLNTFASMVKGNLIVVDAIKAALSKFEGQPPSDDQVLVAISETLFTVALNKDARQTVSCYLIQLYANHLFISDPTSEFGTCMRFARREIDELLSFTVLDRIAKYVWGRRDQFLDLWTRFAEDMEAYPQSTTHILQRVVVDTVQLLEAA
Ga0187857_100428574	F039920	N/A	LDRTGRRQVLHGLLAQYNLGSESAKVALGMAHQNLPGFTALMERNVRLMRPGAAMEKTLQAVLARPAKPKFRRAAPEVNHSSVRFVGLDKLKF