Scaffold Ga0187881_10064530

Overview

Basic Information

• Taxon OID: 3300018024
• Scaffold ID: Ga0187881_10064530
• Source Dataset Name: Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_100
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1730
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Minnesota
• Coordinates
  • Lat. (^o): 47.5028
  • Long. (^o): -93.4828

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016632	Metagenome / Metatranscriptome	245	Y
F027079	Metagenome / Metatranscriptome	195	Y
F028392	Metagenome	191	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0187881_100645302	F027079	AGGAG	VIKSFVNLCLILFLDMLAYMVAIVAAAAVAWATVCGARWVCAAFRNSVLALPARQRKKEMCAHATR
Ga0187881_100645303	F016632	AGGAGG	LTGILETFALVEIASGIGFLANWRNKVLKTKVNFFRQPHNRPSPFDKVLRGKVGRAVTRQDRLRLQLADGLVKLIRKLVQYEAFRQVVRGLALAHSPMRKALRKKGERPW
Ga0187881_100645305	F028392	N/A	DVRMSKTTAVVKLPEILRNGSSHLVKLAGKVDSFSLVLQRTPECQLRRQIEKEYHAMVFATRKEVRKYCPKYRYFPGEGILDFSTDCASGQLEAGDRGKPPRPKRGRLCQECCFYLGEPEEQVPEMTLGGKPEHLAPPA