NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187864_10040730

Scaffold Ga0187864_10040730


Overview

Basic Information
Taxon OID3300018022 Open in IMG/M
Scaffold IDGa0187864_10040730 Open in IMG/M
Source Dataset NamePeatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_40
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2676
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014894Metagenome / Metatranscriptome259Y
F036810Metagenome169Y
F041733Metagenome / Metatranscriptome159Y
F045709Metagenome / Metatranscriptome152Y
F070426Metagenome123Y

Sequences

Protein IDFamilyRBSSequence
Ga0187864_100407301F036810AGGAGMSQPERRSVSRWTRLQSFAVGKYKAVQLSIERRSFERNLETIVRAALAHQSLGLAAGHPQYKLLRQQVDSTCAKFAHRWNITPDLLDAQIPAITKLKSLANPAPKPEPAVLVSLGIAGAVAVFFLMGLLAGLASVGYHLIGGR
Ga0187864_100407302F070426GGAGGMILELITATEASMFSASWIRQSRLRRQQILMGRSTREINLPFLDHYLRQQTTNPTRLQTFAAQKLAAVCRHAVHTQAFELLVLKLIQSASRRYRRKSEISKIKVIL
Ga0187864_100407303F045709AGGMNLTPSQKGSFLAGVGLWVLIWASVWKADDIAQAMRIQRWFNSRRCVSWIGRHKSTSLLGTELVNYGTHGLDPLGVAFSLGGTVVNVLFIYLLLPCLEKLLRQRGTTSATLR
Ga0187864_100407304F014894AGGAGGMRMSIGVPGISIYFEHHQVKPFIKYQSTKAKELFDQRVVPTVLRGTCKVLEAVANNTADAHDYLIGKLKTKQSA
Ga0187864_100407305F041733AGGAGGMLAIKPDGKKKITLTDRLICGVLGAAWLPLGIAAAAGIGGYKYWQSKTEKWAEEYKKDHPEEVKKLKP
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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