Scaffold Ga0187864

Basic Information
Taxon OID	3300018022 Open in IMG/M
Scaffold ID	Ga0187864_10010437 Open in IMG/M
Source Dataset Name	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_40
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_40

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	6281
Total Scaffold Genes	13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	12 (92.31%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

6281

Total Scaffold Genes

13 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

12 (92.31%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (66.67%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location Name	USA: Minnesota
Coordinates	Lat. (^o)	47.5028	Long. (^o)	-93.4828	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Minnesota

Coordinates

Lat. (^o)

47.5028

Long. (^o)

-93.4828

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002761	Metagenome / Metatranscriptome	531	Y
F025427	Metagenome / Metatranscriptome	201	Y
F093116	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0187864_1001043713	F093116	N/A	VDARDGQMGIGCVVNAIVWFNLLWLNRTSILAQLRTMEPSSKVLEAIRWMELDLPKSQMPMIASRLEEIIDSIKMNGKSVEWANGVITEFRNTCPVAPKFWWQGGFQGQGRIPRHRLAIYNEPIPVTTAMDIAREEWVELFKKARKYADKESWKRCWRVPLEIRTFPTRPEAATAARDFWLLYNRTREAKKAEFLKAGKDHRDKRVTNEQEAGLAAYLFAEEDVHNRIEASGMYLEIYAELVKLVFDRELTLEPPRNPDGAVKPVADGILGGPHTLDGFLDMARAAGVTRKYVPISWESDRVRADYGHLNLDVVVEDTLVRMVGSTPNPASWLGIVDVPDGQYRLEHGLVATEDDTEAPPQVTTVALPAVNGFEQRLRDIALKQEDRQKIEAELKLFQAQVGQRVTVKPVTYHNPKTCQDEPAAEVFLEGKSEPLCWISREQVSTVTRELTGILVSNGKYSLKALCPLPEQGAQS
Ga0187864_100104375	F002761	AGGAGG	MTFTPSSTSSFTAGAVFWSMVWAGLGKLNELARFVGFKRAKPRESALRWINSHKVIALTTTEVVNYSVHGISSPLGVTFALGGTLVNIFMVTFIVPIWCRLSNLELR
Ga0187864_100104376	F025427	AGGAG	MQPGEMEELLVSLETCPIQKKGLVWRLLKLYWKRLLFIVLMLVLPGGLIVLFLCVTAWALNWEHEMTAYMDETYKKWKEEHDIHSE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0187864_10010437

Overview

Ecosystem & Geography

Associated Families

Sequences