Scaffold Ga0187886_1000635

Overview

Basic Information

• Taxon OID: 3300018018
• Scaffold ID: Ga0187886_1000635
• Source Dataset Name: Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_150
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 39707
• Total Scaffold Genes: 40
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (17.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Minnesota
• Coordinates
  • Lat. (^o): 47.5028
  • Long. (^o): -93.4828

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030615	Metagenome	185	Y
F059491	Metagenome	134	Y
F096292	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0187886_100063522	F030615	N/A	MKKKRFRIISYNKGDISFYETRVKTWLGWVSFTVFYKTDILHILSDPSVQKSLAYERINQYCQIKGYKKKEIEVTEIDTGNNKKWIFFQRIYSS
Ga0187886_10006353	F096292	N/A	MKILKTHFRKNDLFYTLVCRNDKVAIYETRQEEDMIRCHFEVARIYIRPAHTAFDVDFEEAEVPTSNDQFYYDGSGAFIKRDNAMKHFLKLSKDLYRGVKQPNRLDTDLPE
Ga0187886_10006359	F059491	N/A	MFSLNKLTDDDIPIPIMHICKPERLGKDMTGLELHEFGLALFMTFIEVQNGKLMAINMNPENGAPNVLVEDSQNVLLYVWVKTDLAPNIPVYVPNETHDVITEISRKYRAILSFASITISCASKEGNLIPKCGGEYYAVLNEFEEI