NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187886_1000066

Scaffold Ga0187886_1000066


Overview

Basic Information
Taxon OID3300018018 Open in IMG/M
Scaffold IDGa0187886_1000066 Open in IMG/M
Source Dataset NamePeatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_150
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)151531
Total Scaffold Genes171 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)125 (73.10%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008989Metagenome / Metatranscriptome324N
F015955Metagenome / Metatranscriptome250Y
F042692Metagenome / Metatranscriptome157Y
F064454Metagenome / Metatranscriptome128N

Sequences

Protein IDFamilyRBSSequence
Ga0187886_1000066100F008989GAGMANNAVLIRGLDRDIYNSVIAKARQQGKNVAELVNEALQQYMQESPSESQDVFDTKKLVIAGTVLLSKSDIMGLHKELGNFHLENSGELTFDKDVDREAFQKIEHIHNTGKLRVPTDVHHFALLKAGHVRGEVEKY
Ga0187886_1000066120F042692GGAMGLRRKIDGVDVIASDNEVWFVQDERICWTTKEELWAGSLRLGKILREKGYRIHSQRFPKKLRELILMLSR
Ga0187886_100006625F015955N/AMDKIEGGTCPRCGQKTLDVYYEEGSDLQLGARCEVCGLKGFFMNGKLVQLATN
Ga0187886_100006699F064454AGAAGMKLVEDLEKLLFEEIPEMETPRIRRCEWCHEPLPNDRYHLKICPQCRKDSIATFMKAH

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