Scaffold Ga0187886_1000066

Overview

Basic Information

• Taxon OID: 3300018018
• Scaffold ID: Ga0187886_1000066
• Source Dataset Name: Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_150
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 151531
• Total Scaffold Genes: 171
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 125 (73.10%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Minnesota
• Coordinates
  • Lat. (^o): 47.5028
  • Long. (^o): -93.4828

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008989	Metagenome / Metatranscriptome	324	N
F015955	Metagenome / Metatranscriptome	250	Y
F042692	Metagenome / Metatranscriptome	157	Y
F064454	Metagenome / Metatranscriptome	128	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0187886_1000066100	F008989	GAG	MANNAVLIRGLDRDIYNSVIAKARQQGKNVAELVNEALQQYMQESPSESQDVFDTKKLVIAGTVLLSKSDIMGLHKELGNFHLENSGELTFDKDVDREAFQKIEHIHNTGKLRVPTDVHHFALLKAGHVRGEVEKY
Ga0187886_1000066120	F042692	GGA	MGLRRKIDGVDVIASDNEVWFVQDERICWTTKEELWAGSLRLGKILREKGYRIHSQRFPKKLRELILMLSR
Ga0187886_100006625	F015955	N/A	MDKIEGGTCPRCGQKTLDVYYEEGSDLQLGARCEVCGLKGFFMNGKLVQLATN
Ga0187886_100006699	F064454	AGAAG	MKLVEDLEKLLFEEIPEMETPRIRRCEWCHEPLPNDRYHLKICPQCRKDSIATFMKAH