Scaffold Ga0187872_10000110

Overview

Basic Information

• Taxon OID: 3300018017
• Scaffold ID: Ga0187872_10000110
• Source Dataset Name: Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_40
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 97471
• Total Scaffold Genes: 106
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 86 (81.13%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Minnesota
• Coordinates
  • Lat. (^o): 47.5028
  • Long. (^o): -93.4828

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000586	Metagenome / Metatranscriptome	1007	Y
F001528	Metagenome / Metatranscriptome	677	Y
F035109	Metagenome / Metatranscriptome	173	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0187872_1000011069	F001528	AGGAG	MSDKNQIVVVLVVALFLGAFVDRATALKIVFGVALLWSLQNQPVIAECVRKLFSHLRKGLTVREYRGDLRKDRRAA
Ga0187872_1000011079	F035109	AGGAGG	MLGQLSSQLMTATAILTLDDLGLGRRCDLDQASRGLAQRSEAQIVRWVQFPAGALFFTLVPGTPESGAAYVLDRKTGVFYLIDFNDQKWGGHSLAEYETLERACGLKLLAQRPWLLKRLCNLRKRA
Ga0187872_1000011098	F000586	AGG	MNHADPDTMRTRARQAVEFLKQQLLRTGTIEPLVAFYFADHIEQVQFEDPSILKHFDVRTMRSFNYLRTLAKINKPQAALITLDVRMGLFESEDREVVADTTAIFVMFDSPLLTIQAIAPYTRSNGRITVSKVHFSEMPGDDNAAPCPLLRIFSAAPVAVC