Scaffold Ga0187860_1012540

Overview

Basic Information

• Taxon OID: 3300018014
• Scaffold ID: Ga0187860_1012540
• Source Dataset Name: Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_40
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5307
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Minnesota
• Coordinates
  • Lat. (^o): 47.5028
  • Long. (^o): -93.4828

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022799	Metagenome / Metatranscriptome	212	N
F065339	Metagenome / Metatranscriptome	127	N
F074279	Metagenome	119	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0187860_10125402	F022799	GGA	MQTPIRSDRCEHCGTILTADPISMWEIVANTICGSLLLAVLVLAGFFAYRWIDRGAFFENPIWHEPLDDWSR
Ga0187860_10125405	F074279	GGAG	MKRIRCVSLLTTSEVQPSRIAEILLRRECTAALVALLRDGDEKAQERWSKQFVPEILNAADKILRDAIDRSLPVTGLRPVEIRESVAWTADSNALAGRVLEVVSRQCIERVYAEAVEKIARRRTLPLAELSLALVPFTDSYTPEKLLARECWCGCWVEDGVSKCSFCGGPAPGGRPTRVWRRVAYGSVQLDVLNETRHNLEERMEKLREMGAQVPSGADPEDYLRQLEWDAPEGEETHER
Ga0187860_10125407	F065339	GAGG	MDPIRVWFSLISGEAATPVNLVVEEWPQSGPAFLHPDILAVAAPDFKETIDLAYRQTLFTLGWPDSATFRIGIESIDPLAFPLPYGFEGDSHFGAVAVGLAQAVARTYPDHFRSGAKHLLPVLQAVSLERVAVAAALDSKKGDFKPVGCIRTKLESFCMLEVSRPAVCVISPTQNLTADSGPLLAVPLQNDPDPYVSVNGHQALPLLRARDPIDVFVQLWKAEAGTFAGCL