NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187873_1082385

Scaffold Ga0187873_1082385


Overview

Basic Information
Taxon OID3300018013 Open in IMG/M
Scaffold IDGa0187873_1082385 Open in IMG/M
Source Dataset NamePeatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_100
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1302
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F033672Metagenome176N
F098490Metagenome103N

Sequences

Protein IDFamilyRBSSequence
Ga0187873_10823852F033672AGGAGMKPPHYNESFDEYARALLAQNNGMPCTHCGSSLGHYATCPLISRDAAELASTQPIAERTIAVPEFSTEDTLRLRAWGVKS
Ga0187873_10823854F098490GGGGGVNLLEQLHSIRTDTAYDNVAYWALTIAIDHVLGLGKEGIEMDIERLRRVAKQ

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