Scaffold Ga0187810_10109582

Overview

Basic Information

• Taxon OID: 3300018012
• Scaffold ID: Ga0187810_10109582
• Source Dataset Name: Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_5
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1089
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment → Coastal Wetland Sediment Microbial Communities From The Mid-Atlantic And Southeast Atlantic Coast Of Usa, Responding To Salinity Intrusion.

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 35.9061
  • Long. (^o): -76.1569
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000739	Metagenome / Metatranscriptome	913	Y
F010188	Metagenome / Metatranscriptome	307	Y
F018044	Metagenome / Metatranscriptome	237	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0187810_101095821	F010188	GAGG	MPVVGSSAYNSAGQITSLVRSLLNDAQGNLFTDTVLLPYANSAYRKLQRALGNAGGGGFIQDDVLLVVTAVTQTDPS
Ga0187810_101095822	F000739	GGTGG	MKRFELWLKGVLAAAISGGAGGVLTGFAAVGIDPQHFNLQTGMGATLRIAAAAALINSVIGVAAYLQKSPLPNDS
Ga0187810_101095823	F018044	N/A	SWYAQTIERENGVSIPALGPFPSRGEYEHCFTLEGPRGEFVQLTPTVAEYIARAIEFSRHAPRSRKKRALDDRAQREERSYDAWAYDRLDDAVPAFHKQPFVTVA