Scaffold Ga0187865_1000771

Overview

Basic Information

• Taxon OID: 3300018004
• Scaffold ID: Ga0187865_1000771
• Source Dataset Name: Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_100
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 42017
• Total Scaffold Genes: 36
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (61.11%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Minnesota
• Coordinates
  • Lat. (^o): 47.5028
  • Long. (^o): -93.4828

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000858	Metagenome / Metatranscriptome	858	Y
F012603	Metagenome / Metatranscriptome	279	Y
F039319	Metagenome / Metatranscriptome	164	Y
F065083	Metagenome / Metatranscriptome	128	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0187865_100077111	F000858	GAGG	MSGSGYLFAAYAVTWIIHIAYLGTIVRRYSRLKREIEELKKSGGRS
Ga0187865_100077118	F012603	AGGAGG	LQTARLLVLTLLVVLLVIAPALAQSQLPNEMLRAVRDEINSTASYTLTAAPPVSLPDTPAPQRVIDKKFIAVMGALGVAESMRFTTHKLVLDHEFAAGAPWVTRVAPNQHLVAKYAGLYAAELLVAYELKKPHSWLPGDKIIRKFWWAYPAAMVAIHTRNGVRSIRTQAPSGCPVAECGS
Ga0187865_100077132	F065083	N/A	LAADTAAESHEYIAMMDLEEKRETGASLMFLGLGFWMMDLLVVFFLPSGIKFGHYATFLGIIIAMGVLGLVLLIIGYKVRGKSSPE
Ga0187865_10007717	F039319	N/A	METLLLVTVLVGTLVLLGFSAVLLRRVSAAAQVDVKAEVAGQLERLGTSLGQKFSAATADMASRLEQLEASHG