Scaffold Ga0187876_1012273

Overview

Basic Information

• Taxon OID: 3300018003
• Scaffold ID: Ga0187876_1012273
• Source Dataset Name: Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_40
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4421
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Minnesota
• Coordinates
  • Lat. (^o): 47.5028
  • Long. (^o): -93.4828

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000275	Metagenome / Metatranscriptome	1391	Y
F068013	Metagenome / Metatranscriptome	125	Y
F071728	Metagenome / Metatranscriptome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0187876_10122731	F071728	GGAGG	MNRPDLADVRRVHVRVNGITFESVRLRRSSGANDFDIVIDDPHIGRFALTAAVPSLELRAEDSGWRQVSLDELKKILADDGELAEVAEEPQASAERESFNRLVAEGEHIMNAE
Ga0187876_10122732	F068013	GAGG	MSDKHKDERFEDRLVKCRDSVLTAWACAALLRPDLSPAGKEKLAKKILKMAESEDHRMGITPAQAQEIVLSNVQCIAKNCPLLIFADPLARELNAFFHEDN
Ga0187876_10122738	F000275	N/A	MSGDRRVSARKRRTRAEVQQLVAEFVSSGMRRSEFCHSRGLSFSTLDRHLKKRRWKRRRRPVSSAGRLVKVELAAKESPTHLAASCGLAVMLPGGRRIEVHPDFDSNTFERLVSVLERV