Scaffold Ga0187868

Basic Information
Taxon OID	3300018002 Open in IMG/M
Scaffold ID	Ga0187868_1018202 Open in IMG/M
Source Dataset Name	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_13_40
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_13_40

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	3445
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (57.14%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

3445

Total Scaffold Genes

7 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

4 (57.14%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (100.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location Name	USA: Minnesota
Coordinates	Lat. (^o)	47.5028	Long. (^o)	-93.4828	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Minnesota

Coordinates

Lat. (^o)

47.5028

Long. (^o)

-93.4828

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025900	Metagenome	199	N
F050080	Metagenome	145	N
F056263	Metagenome	137	N
F062380	Metagenome	130	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0187868_10182022	F062380	GAGG	MPGDVNDFGDFEELLFADPGSRGACKLIIAYHPAFPLALGRIECASGLPIDVRVNVLESTPTLHTAELVFTGKTTDLCELQMRLTQWAAQFPHLPPMPEEALYARDNPSAPSGPPEGVDQSGV
Ga0187868_10182023	F050080	AGGAGG	MASSFVSRQRTLQRNTPPVAIKPFVRAAQNFALQTKQNREITDGSGQSMGTEVYTEIRMQGNVLAIRDEGIEDEFGRQYIGVVIQINPDKDRFVQTADPELHAQILKLNKGDLVYVTSEWHRNSSGRGFHARAKTITVLEPAPAPGPVAVEAATDELAAVA
Ga0187868_10182025	F025900	AGGAG	VPVSRTRKPSKKKNNLAPSSKEARQKIRRWSFVVQVTKGDTVKTFQPPALTIGNMTSARAAADTILNDIASLDQFKDCKVVVNPKAEETVSLTILNQINGLNEQSRLLTFALKRAVTDVVKQDTSCPCNQIEDEAARQVEFDRHVTELLGKYVMEEQQAMRRQQMIDAGIDPDQVLNNQLPAEQAPAEFQAAPAVEESPAEQVNTVPFPDGEFGKEAA
Ga0187868_10182026	F056263	AGGAG	MSAITVDVASTPWLQRAGLKLRSWQGTGMSTFNAWRQHRDQESLEKALARIIETANGHRAKGLPKGSPAYFALRDKATAKINTFCKKWNVDPTVIEAEAPALREMYALTIPDKQAPAGIKMFAAFMGGILSLILIGAASGLVNVGHNWVMHLFAHVIH

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0187868_1018202

Overview

Ecosystem & Geography

Associated Families

Sequences