Scaffold Ga0187868_1007132

Overview

Basic Information

• Taxon OID: 3300018002
• Scaffold ID: Ga0187868_1007132
• Source Dataset Name: Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_13_40
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6197
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (92.86%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Minnesota
• Coordinates
  • Lat. (^o): 47.5028
  • Long. (^o): -93.4828

Associated Families

Family	Category	Number of Sequences	3D Structure?
F046150	Metagenome	151	N
F050107	Metagenome	145	N
F050108	Metagenome	145	N
F053027	Metagenome	141	N
F059592	Metagenome	133	N
F102366	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0187868_10071321	F050108	GAGG	MATLAIDQMQFPFMPPPAPLPTELHNLKHNALQLGQLGNTVRRGSKWANVPKGHVIDLTEGPDHKYVGAGRVVKVWTGPFNEVPAVVLDRNHSGSQSYSSVLAAMRNAYGADFSEDEIVVFLDYTRIS
Ga0187868_100713210	F046150	GAGG	MNRPTQPQSSRLRVQAATSAVNAPIECPSCGSIFFIEAQAGMYTTSGAGYRNVNQGPQKVYLCPCGEIMIPPNYASGVPAGSERDLFVQSLKLAIARRNSTTLDQVAQGTVSLAEHNKLKAQFEELAGRFNTWAGGGDMPEPVELSTEGDEETHEQEPAPAPLQLTMRELGAKPPIATGTQGRSAASAVQAIGDHKEVTSTPAPIYTGGARERMKRQGGQ
Ga0187868_100713212	F053027	AGAAG	MLLTERQVDLRLKCPMFGMEDKHGPSSYECAQKLLRWAILNAFKGRLVPVATLRGKFESIWNGYAAGWAPDHQPAYYAGLRAGNTAARKIFLFLQHYEVLKPVEVYSVDLAGDRVEGEYAVVLRRHDRRTDERPVILQAHEWRPAYCQQPGAIELIRYVHLMGATDYTSPGVYHLPLFRGEPWKMKNFDLPLVRKAVASILNAVRNTDHPVPGSHCEDCIGKSCRSLAHA
Ga0187868_10071325	F050107	GAGG	MAGLWFKPVCDDLLGKIHRWWVNYERGEIFSTREWLDREGNKVDKPTRYAYRTPFKPLEIRHLVSILEALAPANSLTKDMKDLHESMKRRFNNLPLKNRPRLLATGEWVITLAWYKADIEEVLTLLLEAKSGKSQTVASLAEQQKAQGKELFEV
Ga0187868_10071328	F102366	GAG	MMVLQHISMPVSDVARFEVSFTGNSDCFVARLDFPAHRGGGYQVFEGILGYKVSPSSPVMGKNRVTPRFPLRPTIPPQTAEDLKEEERQLRLRLDYGETFNNDRVS
Ga0187868_10071329	F059592	AGGGGG	VPKHQLASRSVNVEFLAGLELVSNKVFPLPGGVGRRQNPSAYDPRLTHLSGLTPVGEEVIYYEHIATVRHKATNQFFVAFKETMDAFLARSTDLQKYPEWLMKQPNKQAEREIHIYLVTRTPQSVPIMRSHEDWLAHIADIGTFDTLAYFLAKNDVIDEKALATLR