Scaffold Ga0187868_1000694

Overview

Basic Information

• Taxon OID: 3300018002
• Scaffold ID: Ga0187868_1000694
• Source Dataset Name: Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_13_40
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 26077
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (77.27%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Minnesota
• Coordinates
  • Lat. (^o): 47.5028
  • Long. (^o): -93.4828

Associated Families

Family	Category	Number of Sequences	3D Structure?
F050093	Metagenome / Metatranscriptome	145	N
F055379	Metagenome	138	N
F066388	Metagenome	126	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0187868_10006941	F066388	N/A	GPSWPPQQAFFESGPIGFTYFAAMWFRYYLAEHIVAAMGEIESKEGVLQLDRGITCIGKVSSHEDFAHSSDALPHAGGNFVDQHGTSWAADTSLMEAQLDISEMTDAWVRQTKDRLFRNLTATERWLLQMIFRKEFNWVQISAMLQCSTQTARQQYNDVMKYLRGHVGVPEAIAA
Ga0187868_10006942	F055379	GGA	MGTWQTLLDACPYIPIPLMAVLFAMGLWHEVVCSNRRIAAGIKPASFQDSTRYKIEPPQGYKTQVADHAIGYLT
Ga0187868_10006943	F050093	GGAG	MTEEATGALEKELAGVNEQIVRLERYKTALNAALQARLDLDGFISTRPQVYSPQTVTLTAITDGKDSPNAQPNSLEMARVVLLNLNGEEKTPDEIRALIKKTYGIEPAKTLDQMLYKRASKGTLFYKTAEGRFGLLSLRATTEEVRTPTTAVA